Antigen Versus PCR for SARS-CoV-2: Introduction, Principle, Differences, and Keynotes

Introduction of Antigen Versus PCR for SARS-CoV-2

Antigen and PCR tests in COVID-19 patients are the most common assays applicable for laboratory diagnosis of COVID-19 caused by a virus, severe acute respiratory syndrome coronavirus 2 (SARS‑CoV‑2). The antigen is a foreign substance that induces an immune response. The nucleocapsid (N) is the most common antigen for the SRAS-CoV-2 antigen test and is also called antigen-detecting rapid diagnostic tests (Ag-RDTs). These Ag-RDTs work in the principle of immunochromatographic (lateral flow) assay. Ag-RDTs for COVID-19 will most often be positive when viral loads are highest and patients are most infectious – typically 1−3 days prior to the onset of symptoms and during the first 5−7 days after the onset of symptoms – and will become negative as the patient clears the infection and recovers. The nasopharyngeal swab is used as a specimen.

Abbott sars-cov-2 antigen test
Fig. Abbott SARS-CoV-2 antigen test-Left (weak) and right (strong) positive

PCR stands for a polymerase chain reaction and PCR assay applies to detect genetic material from a specific organism but here for a virus, SARS-Cov-2. The test detects the presence of genes of a virus if you have been infected at the time of the test. This PCR is also applicable to detect fragments of the virus even after you have no longer been infected. Test specimens are nasopharyngeal swabs,  oropharyngeal swabs, bronchoalveolar lavage (BAL), sputum, etc.

Principle

Antigen test works on the principle of immunochromatography while polymerase chain reaction (PCR) itself is a technique in which three common steps are denaturation (template into single strands), annealing ( primers to each original strand for new strand synthesis), and extension (new DNA strands from the primers).

SARS-CoV-2 RT-PCR Test-Positive
Fig. SARS-CoV-2 RT-PCR Test-Positive

Differences-Antigen Versus PCR for SARS-CoV-2

The differences between antigen tests and PCR are as follows-

S. NoAntigen TestPCR
1Immunochromatographic testMolecular Test
2It is a rapid diagnostics test (RDT).PCR stands for a polymerase chain reaction and it is a technique.
3It detects antigen/s.It detects gene/s.
4It is less sensitive.Highly sensitive
5Rapid assay Time taken
6Reports in minutes ( average 3o minutes)Reports in hours (4 hours)
7Presumptive testConfirmatory tests
8It can be assayed in an ordinary setup.It needs a high level of setup.
9No need for highly qualified laboratory personnel.There is a need for highly qualified laboratory personnel.
10One staff can perform the test.Numerous laboratory personnel is required.
11Relatively inexpensive Expensive
12Less accurateIt is a highly accurate test with accuracy that approaches 100% and this is the reason, it is the gold standard for diagnosing SARS–CoV–2.
13It is a qualitative test. It is both a qualitative and semi-quantitative assay and thus positive report is mentioned with ct (cyclic threshold) values.
14can miss early cases of COVID-19 ( low viral load)Rarely occur so ( can detect even low viral load)
15. It can detect a viral load of a ct value less than 30. It can detect a viral load of ct value up to 40.

Keynotes on Antigen and PCR for SARS-CoV-2

Antigen Test

  • Antigen test occurs as positive typically 1−3 days prior to the onset of symptoms and during the first 5−7 days after the onset of symptoms thus it is known as an early marker of lab diagnosis.
  • It is a marker of active infection.
  • It is applicable at the point of care i.e. outside clinical laboratories.
  • Easy to perform
  • Quick results (within 30 minutes) enabling rapid implementation of infection control measures, including contact tracing
  • Less expensive than nucleic acid amplification testing (NAAT), e.g., RT-PCR assays

PCR Test

  1. PCR test detects active as well as inactive SARS-CoV-2 infection and therefore there is the significance of cycle threshold (Ct) values.
  2. Ct < 25 indicates high viral load, Ct 25-30 medium viral load, and Ct > 30 low viral load.
  3. This test is highly sensitive and specific.
  4. It is also a gold standard test for diagnosing COVID-19.

Further Readings

  1. WHO-2019-nCoV-Antigen_Detection-2020.1-eng.pdf
  2. https://www.who.int/publications/i/item/antigen-detection-in-the-diagnosis-of-sars-cov-2infection-using-rapid-immunoassays
  3. https://covidreference.com/diagnosis
  4. https://www.umassmed.edu/news/news-archives/2021/11/whats-the-difference-between-a-pcr-and-antigen-covid-19-test/
  5. https://academic.oup.com/femspd/article/79/1/ftaa069/6123719
  6. https://bmcmedicine.biomedcentral.com/articles/10.1186/s12916-020-01810-8
  7. https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-020-05419-3
  8. https://my.clevelandclinic.org/health/diagnostics/21462-covid-19-and-pcr-testing
  9. https://apps.who.int/iris/handle/10665/337948
  10. https://jcm.asm.org/content/58/11/e01695-20
  11. https://universe84a.com/antigen-antibody-pcr-tests-covid-19/
  12. https://link.springer.com/article/10.1007/s00540-020-02875-8

156 thoughts on “Antigen Versus PCR for SARS-CoV-2: Introduction, Principle, Differences, and Keynotes”

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    유저 가이드: 대행 서비스를 더욱 합리적으로 사용할 수 있도록 세부 안내서를 제공합니다.
    운송장 조회: 일본 사가와 등 주요 운송사의 추적 시스템과 연동하여 운송 상황을 실시간으로 확인 가능합니다.
    3. 비용 안내와 부가 서비스
    비용 계산기: 예상되는 비용을 간편하게 계산해 예산 관리를 돕습니다.
    부가 서비스: 교환 및 반품, 폐기 및 검역 지원 등 추가적인 편의 서비스를 제공합니다.
    출항 스케줄 확인: 해외 배송의 경우 출항 일정을 사전에 확인 가능하여 배송 계획을 세울 수 있습니다.
    4. 공지사항
    기본 검수 공지
    무료 검수 서비스로 고객의 부담을 줄이며, 보다 철저한 검수가 필요한 경우 유료 정밀 검수 서비스를 권장합니다.

    수출허가서 발급 안내
    항공과 해운 수출 건에 대한 허가서를 효율적으로 발급받는 방법을 상세히 안내하며, 고객의 요청에 따라 이메일로 전달됩니다.

    노데이터 처리 안내
    운송장 번호 없는 주문에 대한 새로운 처리 방안을 도입하여, 노데이터 발생 시 관리비가 부과되지만 서비스 품질을 개선합니다.

    5. 고객과의 소통
    카카오톡 상담: 실시간 상담을 통해 고객의 궁금증을 해결합니다.
    공지사항 알림: 서비스 이용 중 필수 정보를 지속적으로 업데이트합니다.
    메인 서비스는 고객 만족을 최우선으로 하며, 지속적인 개선과 세심한 관리를 통해 최상의 경험을 제공합니다.

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