Introduction
Table of Contents
Urine microscopy is a laboratory diagnostic method used to examine the microscopic components of urine sediment. It helps detect cells, crystals, casts, microorganisms, and other formed elements. This test is critical in the diagnosis of urinary tract infections (UTIs), renal diseases, systemic disorders, and metabolic abnormalities.
Principle
Urine contains dissolved solutes and suspended elements. When urine is centrifuged, sediment settles at the bottom. Examination of this sediment under a microscope reveals cellular elements (RBCs, WBCs, epithelial cells), crystals, casts, and microorganisms. The principle is based on direct microscopic visualization after centrifugation and resuspension.
Test Requirements
- Freshly voided midstream urine sample (10–15 mL).
- Sterile container.
- Centrifuge tubes.
- Centrifuge
- Microscope (bright-field phase contrast preferred).
- Glass slides and cover slips.
- Pipettes.
- Staining reagents (if needed, e.g., Sternheimer-Malbin, Gram stain).
Procedure
- Collection: Collect a midstream, clean-catch urine sample.
- Centrifugation: Centrifuge 10–15 mL urine at 1500–2000 rpm for 5 minutes.
- Decanting: Discard the supernatant, leaving ~0.5 mL with sediment.
- Resuspension: Mix the sediment gently.
- Slide Preparation: Place one drop on a clean glass slide and cover with a cover slip.
- Examination: Examine under low power (10x) for casts and crystals, then high power (40x) for cells and microorganisms.
- Staining (optional): Use Sternheimer-Malbin stain to enhance visualization of formed elements.
Findings
Urine microscopy reveals:

- Cells: RBCs, WBCs, epithelial cells, renal tubular cells.
- Casts: Hyaline, granular, cellular, waxy, fatty casts.
- Crystals: Uric acid, calcium oxalate, triple phosphate, cystine crystals.
- Microorganisms: Bacteria, yeast, parasites (Trichomonas).
- Other elements: Spermatozoa, mucus, fat globules, contaminants.
Clinical Significance
- RBCs: Indicate hematuria, trauma, glomerulonephritis, renal stones.
- WBCs: Suggest urinary tract infection or pyelonephritis.
- Epithelial cells: May indicate tubular injury or contamination.
- Casts: Diagnostic of renal origin disorders (e.g., RBC casts = glomerulonephritis).
- Crystals: Point to metabolic disorders or predisposition to renal calculi.
- Bacteria/yeast: Indicate infection.
- Fat globules: Suggest nephrotic syndrome.
Keynotes
- Fresh samples are essential to avoid artifacts.
- Centrifugation speed and time should be standardized.
- Staining improves the accuracy of interpretation.
- Always correlate microscopic findings with chemical and clinical data.
- Urine microscopy is a cost-effective, rapid, and essential tool in nephrology and infectious disease diagnosis.
Further Readings
- https://www.synlab.com.ng/laboratory-analysis-of-urine-microscopy-and-culture/
- https://www.synlab.com.ng/understanding-urinalysis-and-urine-microscopy-culture/
- https://healthlibrary.brighamandwomens.org/Library/TestsProcedures/167,urinanalysis_microscopic_exam
- https://tidsskriftet.no/en/2014/09/perspectives/urine-microscopy-important-diagnostic-tool
- https://emedicine.medscape.com/article/2074001-overview
- https://tidsskriftet.no/en/2014/09/perspectives/urine-microscopy-important-diagnostic-tool
- https://www.urmc.rochester.edu/encyclopedia/content?contenttypeid=167&contentid=urinanalysis_microscopic_exam
- https://www.mayoclinic.org/tests-procedures/urinalysis/about/pac-20384907
- https://wvs.academy/learn/companion-animals/practical-pathology/urinalysis/sample-assessment/microscopic-urine-assessment/
- https://liveutifree.com/clean-catch-urine/